Protein Disorder Predictors

Xue, B., R. L. DunBrack, R.W. Williams, A.K. Dunker, and V. N. Uversky (2010) "PONDR-Fit: A meta-predictor of intrinsically disordered amino acids." Biochim. Biophys. Acta 1804(4):996-1010, PMID: 20100603 PONDR-FITTM
Internal pointer to the PONDR-FIT meta-predictor and other PONDR methods.
Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB. "Protein disorder prediction: implications for structural proteomics." Structure. 2003;11(11):1453-9, PMID: 14604535 DisEMBLTM
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT. "Prediction and functional analysis of native disorder in proteins from the three kingdoms of life." J Mol Biol. 2004;337(3):635-45, PMID: 15019783 DISOPRED2
MacCallum B. "Order/Disorder Prediction With Self Organising Maps." CASP 6 meeting, Online paper DRIPPRED
Cheng J, Sweredoski M, Baldi P. "Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data" Data Mining and Knowledge Discovery. 2005; 11(3):213-222, Online Paper DISpro
Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, Beckmann JS, Silman I, Sussman JL. "FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded." Bioinformatics. 2005;21(16):3435-8, PMID: 15955783 FoldIndex©
Linding R, Russell RB, Neduva V, Gibson TJ. "GlobPlot: Exploring protein sequences for globularity and disorder." Nucleic Acids Res. 2003;31(13):3701-8, PMID: 12824398 GlobPlot 2
Dosztanyi Z, Csizmok V, Tompa P, Simon I. "IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content." Bioinformatics. 2005;21(16):3433-4, PMID: 15955779 IUPred
Romero P, Obradovic Z, Li X, Garner EC, Brown CJ, Dunker AK. "Sequence complexity of disordered protein." Proteins. 2001;42(1):38-48, PMID: 11093259 PONDR®
Coeytaux K, Poupon A. "Prediction of unfolded segments in a protein sequence based on amino acid composition." Bioinformatics. 2005;21(9):1891-900, PMID: 15657106 PreLink
Yang ZR, Thomson R, McNeil P, Esnouf RM. "RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins." Bioinformatics. 2005;21(16):3369-76, PMID: 15947016 RONN
Vullo A, Bortolami O, Pollastri G, Tosatto S. "Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines" Nucleic Acids Res. 2006;34(Webserver Issue):W164-W168, PMID: 16844983 SPRITZ
Garbuzynskiy SO, Lobanov MY, Galzitskaya OV. "To be folded or to be unfolded?" Protein Sci. 2004;13(11):2871-77., PMID 15498936

Galzitskaya OV, Garbuzynskiy SO, Lobanov MY. "Prediction of natively unfolded regions in protein chain." Mol Biol (Mosk). 2006;40(2):341-8., PMID 16637275
Vucetic S, Brown CJ, Dunker AK, Obradovic Z. "Flavors of protein disorder." Proteins. 2003 Sep 1;52(4):573-84, PMID: 12910457 VL2
Obradovic Z, Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK. "Predicting intrinsic disorder from amino acid sequence." Proteins. 2003;53 Suppl 6:566-72, PMID: 14579347 VL3, VL3H, VL3E
Obradovic Z, Peng K, Vucetic S, Radivojac P, Dunker AK. "Exploiting heterogeneous sequence properties improves prediction of protein disorder." Proteins. 2005;61 Suppl 7:176-82, PMID: 16187360 VSL2
Weathers EA, Paulaitis ME, Woolf TB, Hoh JH. "Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein." FEBS Lett. 2004;576(3):348-52, PMID: 15498561  

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